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Antibiotics, sugar, and the gut microbiome: what the new Nature study found

Gino Broccolo · Updated 2026-09-30

A Nature study found that greater sugar intake during antibiotic exposure predicted deeper microbiome disruption in hospitalized stem-cell-transplant patients, with mouse experiments supporting the direction of the effect.

Quick answer

Sugar-rich intake was associated with deeper antibiotic-related microbiome disruption in a specialized transplant population, and mice showed a similar direction of effect. That is a useful research signal, not a universal diet rule.

What the study followed

Researchers recorded 9,419 meals and analyzed more than 1,000 stool samples from 173 people hospitalized for hematopoietic cell transplantation. All participants received antibiotics during the dietary collection period.

The human signal

Greater sweets and sugar intake during antibiotic exposure predicted lower microbial diversity and greater expansion of Enterococcus. The analysis attempted to account for repeated samples and major antibiotic exposures.

Why the mouse experiments matter

Sucrose supplementation in mice increased and prolonged antibiotic-associated Enterococcus expansion, which supports a plausible biological interaction between dietary sugar and antibiotic-driven microbiome disruption.

What it does not prove

This does not show that every person taking antibiotics should eliminate sugar, that dietary restriction prevents antibiotic side effects, or that a change in microbiome diversity necessarily improves a patient-important clinical outcome.

How BOTH handles evidence & testing

The human analysis is observational and comes from a highly specific, medically complex population. Mouse experiments add biological plausibility but do not justify universal dietary prescriptions for everyone taking antibiotics.

Affiliate relationships do not determine our evidence standard or testing status. Affiliate disclosure · Editorial policy

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